../../tmp/servers/virsirnadb/2018932091
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2193 | 1 | caagttcaccacaggtgag | 19 | |
| D10330.1 | HPEHEV Hepatitis E virus genomic RNA | 4185 | ................... | 4203 | 100 |
| M73218.1 | HPESVP Hepatitis E structural and nonstructural protein mRNA, complete | 4185 | ................... | 4203 | 100 |
| X99441.1 | Hepatitis E virus ORF1, ORF2 & ORF3 | 4185 | ................... | 4203 | 100 |
| AF185822.1 | Hepatitis E virus nonstructural polyprotein gene, partial cds; struct | 4134 | ................... | 4152 | 100 |
| AF076239.3 | Hepatitis E virus from Hyderabad, India, complete genome | 4185 | ................... | 4203 | 100 |
| DQ459342.1 | Hepatitis E virus from India, complete genome | 4185 | ................... | 4203 | 100 |
| AF051830.1 | Hepatitis E virus strain TK15/92, complete genome | 4185 | ......t............ | 4203 | 94 |
| AF459438.1 | Hepatitis E virus from North India, complete genome | 4185 | .g................. | 4203 | 94 |
| AB108537.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate:CCC220 | 4206 | ......t............ | 4224 | 94 |
| EU360977.1 | Hepatitis E virus isolate swX07-E1, complete genome | 4220 | .........a......... | 4238 | 94 |
| AY115488.1 | Swine hepatitis E virus strain Arkell, complete genome | 4229 | .........a..t...... | 4247 | 89 |
| AB248522.1 | Hepatitis E virus genomic RNA, complete genome, isolate: swJ12-4 | 4216 | ...a.....a......... | 4234 | 89 |
| FJ705359.1 | Hepatitis E virus isolate wbGER27, complete genome | 4213 | ...a...........g... | 4231 | 89 |
| D11093.1 | HPEUIGH Hepatitis E virus complete genome sequence | 4186 | _...........g..g... | 4203 | 84 |
| AJ272108.1 | Hepatitis E virus (genotype 4) complete genome sequence | 4226 | _.....t..a......... | 4243 | 84 |
| AJ272108.1 | Hepatitis E virus (genotype 4) complete genome sequence | 2116 | ____.........._____ | 2107 | 52 |
| AJ272108.1 | Hepatitis E virus (genotype 4) complete genome sequence | 2229 | _______..........__ | 2220 | 52 |
| AY723745.1 | Hepatitis E virus isolate IND-SW-00-01, complete genome | 4226 | _.....t..a......... | 4243 | 84 |
| AB220974.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 4226 | _.....t..a......... | 4243 | 84 |
| AB253420.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate:HEVN2 | 4201 | _..a..t............ | 4218 | 84 |
| AB248521.1 | Hepatitis E virus genomic RNA, complete genome, isolate: swJ8-5 | 4217 | _..a.....a......... | 4234 | 84 |
| DQ279091.2 | Swine hepatitis E virus isolate swDQ, complete genome | 4221 | _.....t..t......... | 4238 | 84 |
| EU366959.1 | Hepatitis E virus isolate swGX32, complete genome | 4227 | _.....t..a......... | 4244 | 84 |
| EU375463.1 | Hepatitis E virus isolate Thai-swHEV07, complete genome | 4218 | _..a.....a......... | 4235 | 84 |
| AB369687.1 | Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E | 4197 | _..a.....a......... | 4214 | 84 |
| EU723513.1 | Swine hepatitis E virus isolate SW627, complete genome | 4192 | _.....t..a......... | 4209 | 84 |
| FJ457024.1 | Hepatitis E virus isolate HEV-H from India, complete genome | 4186 | _...........g..c... | 4203 | 84 |
| AB291964.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JYK-Tok03C | 4221 | _..a..t............ | 4238 | 84 |
| EU723512.2 | Swine hepatitis E virus isolate SW626, complete genome | 4217 | _.....t..a......... | 4234 | 84 |
| AB481226.1 | Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-E | 4217 | _..a.....a......... | 4234 | 84 |
| FJ653660.1 | Hepatitis E virus isolate CU001, complete genome | 4201 | _..a.....a......... | 4218 | 84 |
| GU119961.3 | Swine hepatitis E virus isolate CHN-XJ-SW13, complete genome | 4227 | _..a.....a......... | 4244 | 84 |
| AB290313.1 | Hepatitis E virus genomic RNA, complete genome, clone: swMN06-C1056 | 4213 | ...a..t..a......... | 4231 | 84 |
| FJ763142.1 | Hepatitis E virus isolate KNIH-hHEV4, complete genome | 4222 | ...a..t..g......... | 4240 | 84 |
| GU937805.1 | Hepatitis E virus isolate ch-bj-n1, complete genome | 4270 | .........a..t..g... | 4288 | 84 |
| AB197673.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JKO-ChiSai98 | 4224 | _..a..t..a......... | 4241 | 78 |
| EU723515.1 | Swine hepatitis E virus isolate SWP7, complete genome | 4279 | _..a..t..a......... | 4296 | 78 |
| EU723516.1 | Swine hepatitis E virus isolate SWP8, complete genome | 4279 | _..a..t..a......... | 4296 | 78 |
| AB291961.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JMH-Osa04C | 4218 | _..a..t..a......... | 4235 | 78 |
| EU723514.2 | Swine hepatitis E virus isolate SWP6, complete genome | 4304 | _..a..t..a......... | 4321 | 78 |
| FJ956757.1 | Hepatitis E virus isolate HEV_RKI, complete genome | 4229 | _..a..t..a......... | 4246 | 78 |
| GU188851.1 | Swine hepatitis E virus isolate WH09, complete genome | 4226 | _..a..t..a......... | 4243 | 78 |
| HQ634346.1 | Hepatitis E virus strain TW6196E, complete genome | 4224 | _..a..t..a......... | 4241 | 78 |
| AB220977.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 3314 | ..t...ac.........__ | 3330 | 73 |
| AB220979.1 | Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: | 3314 | ..t...ac.........__ | 3330 | 73 |
| AB291959.1 | Hepatitis E virus genomic RNA, nearly complete genome, isolate: JTC-K | 3274 | ..t...ac.........__ | 3290 | 73 |
| AB291965.1 | Hepatitis E virus genomic RNA, complete genome, isolate: HRC-HE14C | 3314 | ..t...ac.........__ | 3330 | 73 |
| AB291966.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JST-KitAsa04 | 3314 | ..t...ac.........__ | 3330 | 73 |
| AB291967.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JKO-Aba-FH06 | 3314 | ..t...ac.........__ | 3330 | 73 |
| AB291968.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JMM-Aba06C | 3314 | ..t...ac.........__ | 3330 | 73 |
| HQ709170.1 | Hepatitis E virus strain Kernow-C1, complete genome | 6145 | _______..........t. | 6156 | 57 |
| HQ389543.1 | Hepatitis E virus strain Kernow-C1, complete genome | 5974 | _______..........t. | 5985 | 57 |
| HQ389544.1 | Hepatitis E virus strain Kernow-C1, complete genome | 6145 | _______..........t. | 6156 | 57 |
| AY230202.1 | Hepatitis E virus from Morocco, complete genome | 5999 | _________.......... | 5990 | 52 |
| AY204877.1 | Hepatitis E virus strain T3 from Chad polyprotein gene, partial cds; | 5960 | _________.......... | 5951 | 52 |
| EF077630.1 | Hepatitis E virus isolate Ch-S-1, complete genome | 6039 | _________.......... | 6030 | 52 |
| AM943646.3 | Avian hepatitis E virus genes for polyprotein, capsid protein and cyt | 1499 | _________.......... | 1508 | 52 |
| AB291962.1 | Hepatitis E virus genomic RNA, complete genome, isolate: JHK-Toy04C | 5958 | _______..........__ | 5967 | 52 |